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John Cary, 12/24/2016 04:29 PM
Preparing a Mac machine for Bilder¶
Bilder on Darwin¶
It is recommended to have Yosemite as this compiles more efficiently and has an XCode that supports C++ 11 by default.
Darwin comes with bash, so it is Bilder ready for the most part. However, Darwin does not come with Fortran, so one needs to install it (see instructions below). A few other items are noted below.
Case insensitive file system¶
We have noted and filed bugs for CMake errors on OS X when using the case-sensitive file system. To fix we use the case-insensitive file system. There may be problems with various packages and the case-insensitive file system.
C and C++ compilers and Xcode command line tools¶
Install Xcode. To obtain version 6, visit https://developer.apple.com/xcode/download, then at the bottom third of the page, click on the "Additional Tools" link . Sign in with your Apple ID.
sudo xcode-select --install
X11¶
X11 should not be needed, but if it is needed:
Install XQuartz X11.
Create a symbolic link so that the X11 headers can be found by the compiler:
sudo ln -s /opt/X11/include/X11 /usr/local/include/X11
HomeBrew¶
One must select a non-OSX package manager for some additional packages. The candidates are HomeBrew, MacPorts, and Fink, with the HomeBrew being our recommendation at this time, as it is active, and it has the philosophy of not building extraneous stuff that is already present on OSX, which MacPorts tends to do, thus using up more disk space. HomeBrew also installs packages in their own subdirs with links to other places in /opt, thus making removal a matter removing a directory and then removing broken links in /opt/homebrew.
HomeBrew requires that one not have root privileges. So we make the directory into which we can write:
sudo -s
mkdir -p /opt/homebrew
chgrp -R admin /opt
chmod -R 775 /opt
chmod -R 2775 /opt/homebrew
exit
and then we work as nonroot:
cd /opt
curl -L https://github.com/Homebrew/brew/tarball/master | tar xz --strip 1 -C homebrew
chmod -R a+rX /opt/homebrew
and finally as root again:
find /opt/homebrew -type l -exec chmod -h a+r '{}' \;
sudo echo "/opt/homebrew/bin" > /etc/paths.d/homebrew
sudo echo "/opt/homebrew/share/man" > /etc/manpaths.d/homebrew
sudo chmod a+r /etc/paths.d/homebrew /etc/manpaths.d/homebrew
Get the required packages...
brew install libpng freetype gd
brew install wget hg ghostscript
Optional packages such as imagemagick can be installed the same way.
If permissions end up wrong, the commands
chmod -R a+rX /opt/homebrew
find /opt/homebrew -type l -exec chmod -h a+r '{}' \;
may help.
To get a more recent version of the gcc compiler
brew tap homebrew/versions
brew install gcc49 --with-fortran
NOT REQUIRED: If your computer is a Jenkins Slave Only, then you will need svn 1.7 (skip otherwise)
If your Jenkins is set to use svn 1.7 (which means you'd need your local svn client to be 1.7 as well), then you can upgrade via HomeBrew as follows:
# Only for Jenkins Slave!!
brew install subversion17
In the process of building svn 1.7, you may find that subversion fails to build because scons is not installed properly. If that's the case, go to /opt/homebrew/opt/scons/bin and do the following:
# Only for Jenkins Slave and SVN fails to build!!
brew update
brew doctor
brew install subversion17
gfortran¶
Recommended Option: HomeBrew¶
Install gcc with HomeBrew as detailed above, using the --with-fortran option to the gcc install. If you have done that, then you can skip this section.
As of this writing, Bilder will look for gfortran-4.9 as a backup to gfortran.
Option 2: HPC¶
Install gfortran from SourceForge HPC. (Do not also install the other gcc compilers.)
As of March 29, 2015, the version is 4.9.0.
Install via
$ tar xzf gfortran-4.9-bin.tar.gz -C /
Option 3: GNU¶
Install gfortran using the installer from http://gcc.gnu.org/wiki/GFortranBinaries.
As of March 29, 2015, the version is 4.9.0.
The binaries will end up being installed in /usr/local/bin
LaTeX¶
Those with sufficient hard drive space (3.4GB after install) may wish to download the full MacTeX package from http://www.tug.org/mactex/downloading.html. After installing, one can see the 'README ME FIRST.pdf' in /Applications/Tex. You will likely need to add /usr/texbin to your path:
setenv PATH /usr/texbin:${PATH} # For tcsh
export PATH=/usr/texbin:${PATH} # For bash
For those who like GUIs, the !TeXworks in /Applications/TeX/TeXworks should work fine.
For those with limited space, install BasicTeX from https://tug.org/mactex/morepackages.html. Add to your PATH:
/usr/local/texlive/2014/bin/universal-darwin/
and run
sudo tlmgr update --self
for i in breakurl cmap comment eepic epstopdf framed gensymb lineno mmap multirow overpic pdftex preprint revtex4 sectsty siunitx subfiles threeparttable titlesec units wrapfig xcite xypic courier helvetic palatino pifont symbol txfonts zapfding; do
sudo tlmgr install $i
done
and then used the autoupdate feature to get any additionally needed packages. Gives a 230 M installation. (As opposed to the usual 2GB installation.)
You many also need
sudo chmod -R a+rX /usr/local/texlive/2014basic/texmf-dist/{tex,fonts}
as it seems that tlmgr does not get the permissions correct.
Disable spindump¶
for faster compilations via
sudo launchctl unload -w /System/Library/LaunchDaemons/com.apple.spindump.plist
Git¶
If any repository package requires Git protocol, then for Lion and earlier you may need Git from http://git-scm.com/download/mac and add /usr/local/git/bin to your path.
Java¶
You will need to install java by invoking the executable in any way such as...
java -version
Follow the instructions in the dialog that takes you to the Oracle website and choose the latest version to download. (as of Nov 2015 this is 1.8)
HostName¶
For bilder to properly send emails the fully qualified hostname must set on the machine. To check this try...
hostname -f
this should return machinename.domainname.com rather than just machinename. If it does not, then set the hostname of the machine by typing the following commands.
sudo scutil --set ComputerName "newname"
sudo scutil --set LocalHostName "newname"
sudo scutil --set HostName "newname"
dscacheutil -flushcache
Restart your Mac after this.
Power Saving Modes¶
For build machines that are not personal machines, disabling certain options will help in connectivity and responsiveness:
Under Spotlight
- disabled the main HD. (multiple mdworkers taking up a lot of cpu.)
Under Energy Saver
- Computer sleep: Set to never
- Unchecked Put hard disks to sleep when possible
- Unchecked Wake for network access
DEPRECATED INSTRUCTIONS¶
Macports ###¶
This provides wget, freetype, and other utilities. Get macports from http://www.macports.org/install.php and install.
Note: Before proceeding with the installation of various macports packages noted below on Lion machines with Xcode 4.3, one needs to run
sudo xcode-select -switch /Applications/Xcode.app
Otherwise, there will be an error installing zlib during the wget installation below.
After the macports installation, do
sudo port install wget
sudo port install ImageMagick +no_x11
sudo port install f2c
XCode¶
Lion¶
On Lion, the command line compilers are not installed automatically. After installing Xcode, navigate to the
Preferences->Download dialog
and install the Command Line Tools. The dialog is..
!screenShotCommandLineTools.png!
or from the command line do
sudo xcode-select --switch /Applications/Xcode.app/Contents/Developer/
xcodebuild
(hit agree)
You may subsequently need to build your first package with sudo in order to accept the Xcode licenses.
Mountain Lion ###¶
Same as Mavericks?
Mavericks¶
sudo xcode-select --install
Java¶
(The below does not apply to yosemite.)
The cmake build may fail due to missing java headers linked to in /System/Library/Frameworks/JavaVM.framework/Headers. To fix:
cd /System/Library/Frameworks/JavaVM.framework/Headers
sudo mv jni.h jni.h.missing
Moving aside the system MPI (Snow Leopard and earlier)¶
The system MPI can interfere with the Bilder built MPI, so we recommend moving aside the system MPI:
cd /usr/lib
mkdir openmpi-save
mv libopen-* libmpi* openmpi-save
cd /usr/bin
mkdir openmpi-save
mv mpi* openmpi-save
Updated by John Cary almost 8 years ago · 14 revisions